Published Papers

Here is a collection of all the papers I have published over the year. Here is my Google Scholar and ORCID for reference. First author publications are indicated with a ⭐.

[6] ⭐ Sinha SD and Tong Y (2025) Improved Hamiltonian learning and sparsity testing through Bell sampling. arXiv (preprint). doi: 10.48550/arXiv.2509.07937

[5] Chauhan PS, Alahi I, Sinha SD, et al. (2024) Genomic and epigenomic analysis of plasma cell-free DNA identifies stemness features associated with worse survival in lethal prostate cancer. Clin Cancer Res 2024. doi: 10.1158/1078-0432.CCR-24-1658

[4] ⭐ Sinha SD, Wideman JG (2023) The persistent homology of mitochondrial ATP synthases. IScience, 26(5), 106700. doi: 10.1016/j.isci.2023.106700.

[3] Macher JN, Coots NL, Girard EB, Langerak A, Muñoz-Gómez SA, Sinha SD, Vos R, Wissels R, Gile G, Renema W, Wideman JG. (2023) Single-Cell Genomics Reveals the Divergent Mitochondrial Genomes of Retaria (Foraminifera and Radiolaria). MBio, 0(0), e00302-23. doi: 10.1128/mbio.00302-23.

[2] Singh RP, Poh Y-P, Sinha SD, Wideman JG. (2023) Evolutionary history of oxysterol binding proteins (OSBPs) reveals complex history of duplication and loss in animals and fungi. Contact. 2023;6. doi: 10.1177/25152564221150428.

[1] Záhonová K, Lax G, Sinha SD, Leonard G, Richards TA, Lukěs J, Wideman JG. (2021) Single-cell genomics unveils a canonical origin of the diverse mitochondrial genomes of euglenozoans. BMC Biology. 19: 103. doi: 10.1186/s12915-021-01035-y.

Oral Presentations

Here are the oral presentations I have given over the years.

[7] Sinha SD et al. (2025), Exploring Entanglement Transitions in the 4-Level Qudit Projective Transverse Field Ising Model. National Conference for Undergraduate Research 2025

[6] Sinha SD et al. (2024), Exploring Entanglement Transitions in the 4-Level Qudit Projective Transverse Field Ising Model. Southern California Conference for Undergraduate Research 2024, Cal State San Bernadino

[5] Sinha SD et al. (2023), Combinatorial genomic and epigenomic analysis of plasma cell-free DNA identifies stemness features associated with worse prognosis in high-risk metastatic castration resistant prostate cancer. Southern California Conference for Undergraduate Research 2023, Cal State Fullerton

[4] Sinha SD et al. (2023), Combinatorial genomic and epigenomic analysis of plasma cell-free DNA identifies stemness features associated with worse prognosis in high-risk metastatic castration resistant prostate cancer. Summer Undergraduate Research Fellowship 2023 Conference, Caltech

[3] Sinha SD et al. (2023) Combinatorial genomic and epigenomic analysis of plasma cell-free DNA identifies stemness features associated with worse prognosis in high-risk metastatic castration-resistant prostate cancer. 2023 Radiation Oncology Research Retreat, WashU School of Medicine.

[2] Sinha SD, Wideman JG (2021) The persistence of homology: Diversity and evolution of eukaryotic ATP synthases. ASU CME Lab Meeting Presentation.

[1] Sinha SD, Wideman JG (2020) Evolution of Eukaryotic ATP Synthase. ASU Evolutionary Biology Symposium 2020.

Poster Presentations

Lastly, here are the poster presentations I have given.

[2] Sinha SD, Muñoz-Gómez SA, Wideman JG (2021) The persistence of homology: Diversity and evolution of eukaryotic ATP synthases. International Society of Protistologists 2021.

[1] Záhonová K, Lax G, Sinha SD et al. (2021) Single-cell genomics unveils a canonical origin of the diverse mitochondrial genomes of euglenozoans. International Society of Protistologists 2021.